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Sample GSM1572884 Query DataSets for GSM1572884
Status Public on Jun 03, 2015
Title Frontal of subject 379 (Sample44)
Sample type genomic
 
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 379
Sex: F
predicted gender: female
age: 96
dna methylation age: 70.2514177776059
age acceleration with respect to noncerebellar samples: -3.23298307004006
cor sample vs gold standard: 0.899250025987954
mean abs difference sample vs gold standard: 0.0815877151795808
postmortem interval: NA
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.4271198
cg00000108 0.8368524
cg00000109 0.7178279
cg00000165 0.1461318
cg00000236 0.7980516
cg00000289 0.4670689
cg00000292 0.6865854
cg00000321 0.3216977
cg00000363 0.1492251
cg00000622 0.02108664
cg00000658 0.8243523
cg00000714 0.07691877
cg00000721 0.8417759
cg00000734 0.052542
cg00000769 0.02903885
cg00000807 0.8691804
cg00000884 0.7787203
cg00000905 0.09763949
cg00000924 0.6258212
cg00000948 0.8999717

Total number of rows: 485577

Table truncated, full table size 10040 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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