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Sample GSM1572883 Query DataSets for GSM1572883
Status Public on Jun 03, 2015
Title Temporal of subject 204 (Sample43)
Sample type genomic
Source name Brain Temporal
Organism Homo sapiens
Characteristics tissue: Brain Temporal
subject id: 204
Sex: F
predicted gender: female
age: 53
dna methylation age: 45.5518081467078
age acceleration with respect to noncerebellar samples: 0.254476594081005
cor sample vs gold standard: 0.898149647317553
mean abs difference sample vs gold standard: 0.0806301425626911
postmortem interval: 12
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3427448
cg00000108 0.8467633
cg00000109 0.684968
cg00000165 0.2121475
cg00000236 0.7414485
cg00000289 0.371417
cg00000292 0.6617476
cg00000321 0.4374704
cg00000363 0.1155681
cg00000622 0.03419421
cg00000658 0.7803949
cg00000714 0.06530002
cg00000721 0.86516
cg00000734 0.04903045
cg00000769 0.03047776
cg00000807 0.8744331
cg00000884 0.7446558
cg00000905 0.06169852
cg00000924 0.6568197
cg00000948 0.8828505

Total number of rows: 485577

Table truncated, full table size 10037 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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