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Sample GSM1572882 Query DataSets for GSM1572882
Status Public on Jun 03, 2015
Title Mid of subject 299 (Sample42)
Sample type genomic
 
Source name Brain MidBrain
Organism Homo sapiens
Characteristics tissue: Brain MidBrain
subject id: 299
Sex: F
predicted gender: female
age: 101
dna methylation age: 79.4832615548742
age acceleration with respect to noncerebellar samples: 2.72129451013298
cor sample vs gold standard: 0.890377586480489
mean abs difference sample vs gold standard: 0.0836427025193035
postmortem interval: 28
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.4240102
cg00000108 0.8922811
cg00000109 0.6670141
cg00000165 0.1912334
cg00000236 0.6704441
cg00000289 0.5003592
cg00000292 0.6090604
cg00000321 0.3439704
cg00000363 0.1688423
cg00000622 0.02200414
cg00000658 0.8502602
cg00000714 0.1697096
cg00000721 0.886065
cg00000734 0.04941644
cg00000769 0.03431877
cg00000807 0.8800985
cg00000884 0.7577595
cg00000905 0.07128205
cg00000924 0.6647763
cg00000948 0.8907098

Total number of rows: 485577

Table truncated, full table size 10045 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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