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Sample GSM1572881 Query DataSets for GSM1572881
Status Public on Jun 03, 2015
Title Frontal of subject 17 (Sample41)
Sample type genomic
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 17
Sex: M
predicted gender: male
age: 15
dna methylation age: 13.2329810388486
age acceleration with respect to noncerebellar samples: -7.15484741585427
cor sample vs gold standard: 0.883902466269835
mean abs difference sample vs gold standard: 0.0838916335523614
postmortem interval: 6
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4418799
cg00000108 0.8983523
cg00000109 0.7133425
cg00000165 0.1772047
cg00000236 0.7330178
cg00000289 0.4338971
cg00000292 0.6528395
cg00000321 0.4782645
cg00000363 0.1939898
cg00000622 0.02481187
cg00000658 0.7687973
cg00000714 0.1267965
cg00000721 0.9082465
cg00000734 0.04793147
cg00000769 0.03554657
cg00000807 0.9074328
cg00000884 0.7564676
cg00000905 0.07684848
cg00000924 0.5629596
cg00000948 0.8824971

Total number of rows: 485577

Table truncated, full table size 10050 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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