GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1572879 Query DataSets for GSM1572879
Status Public on Jun 03, 2015
Title Temporal of subject 351 (Sample39)
Sample type genomic
Source name Brain Temporal
Organism Homo sapiens
Characteristics tissue: Brain Temporal
subject id: 351
Sex: M
predicted gender: male
age: 82
dna methylation age: 61.556841542656
age acceleration with respect to noncerebellar samples: -2.75037395312324
cor sample vs gold standard: 0.884785151112303
mean abs difference sample vs gold standard: 0.0853839772878634
postmortem interval: 17
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.400952
cg00000108 0.9236395
cg00000109 0.7647059
cg00000165 0.1903382
cg00000236 0.7831677
cg00000289 0.3525809
cg00000292 0.6070873
cg00000321 0.4947651
cg00000363 0.1001951
cg00000622 0.01711284
cg00000658 0.8101892
cg00000714 0.1012633
cg00000721 0.903183
cg00000734 0.04787859
cg00000769 0.02669614
cg00000807 0.8913362
cg00000884 0.7490377
cg00000905 0.1087248
cg00000924 0.6296631
cg00000948 0.9377037

Total number of rows: 485577

Table truncated, full table size 10046 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap