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Sample GSM1572878 Query DataSets for GSM1572878
Status Public on Jun 03, 2015
Title Cingulate Gyrus of subject 267 (Sample38)
Sample type genomic
Source name Brain Cingulate Gyrus
Organism Homo sapiens
Characteristics tissue: Brain Cingulate Gyrus
subject id: 267
Sex: M
predicted gender: female
age: 45
dna methylation age: 34.2703299946473
age acceleration with respect to noncerebellar samples: -5.78289564262709
cor sample vs gold standard: 0.89135017582103
mean abs difference sample vs gold standard: 0.08179264834091
postmortem interval: 12
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3823529
cg00000108 0.8575091
cg00000109 0.6943378
cg00000165 0.153343
cg00000236 0.8013843
cg00000289 0.4243818
cg00000292 0.719204
cg00000321 0.3264877
cg00000363 0.189435
cg00000622 0.01514007
cg00000658 0.8121836
cg00000714 0.08980867
cg00000721 0.9103937
cg00000734 0.04151963
cg00000769 0.03272
cg00000807 0.8802213
cg00000884 0.7237275
cg00000905 0.07435968
cg00000924 0.6089935
cg00000948 0.8895268

Total number of rows: 485577

Table truncated, full table size 10043 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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