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Sample GSM1572874 Query DataSets for GSM1572874
Status Public on Jun 03, 2015
Title Occipital of subject 239 (Sample34)
Sample type genomic
 
Source name Brain Occipital
Organism Homo sapiens
Characteristics tissue: Brain Occipital
subject id: 239
Sex: F
predicted gender: female
age: 100
dna methylation age: 70.2988996968732
age acceleration with respect to noncerebellar samples: -5.80755410844895
cor sample vs gold standard: 0.89105030297712
mean abs difference sample vs gold standard: 0.0866739671498115
postmortem interval: 26
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.3880118
cg00000108 0.8757738
cg00000109 0.7019739
cg00000165 0.1529371
cg00000236 0.7528908
cg00000289 0.4825668
cg00000292 0.7194566
cg00000321 0.473242
cg00000363 0.1443525
cg00000622 0.02690133
cg00000658 0.7956815
cg00000714 0.09158459
cg00000721 0.8301617
cg00000734 0.05734152
cg00000769 0.04599313
cg00000807 0.8893486
cg00000884 0.6853193
cg00000905 0.1142114
cg00000924 0.6834545
cg00000948 0.8732547

Total number of rows: 485577

Table truncated, full table size 10019 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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