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Sample GSM1572873 Query DataSets for GSM1572873
Status Public on Jun 03, 2015
Title Cingulate Gyrus of subject 315 (Sample33)
Sample type genomic
Source name Brain Cingulate Gyrus
Organism Homo sapiens
Characteristics tissue: Brain Cingulate Gyrus
subject id: 315
Sex: F
predicted gender: female
age: 63
dna methylation age: 44.9173398447746
age acceleration with respect to noncerebellar samples: -6.93512410204269
cor sample vs gold standard: 0.890992246910212
mean abs difference sample vs gold standard: 0.0868489818672531
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4821614
cg00000108 0.8812658
cg00000109 0.7010332
cg00000165 0.1971292
cg00000236 0.7995215
cg00000289 0.5320543
cg00000292 0.6980618
cg00000321 0.3914859
cg00000363 0.1604333
cg00000622 0.02429932
cg00000658 0.8069164
cg00000714 0.08844902
cg00000721 0.8900117
cg00000734 0.08489124
cg00000769 0.04156876
cg00000807 0.8770895
cg00000884 0.7881144
cg00000905 0.1336361
cg00000924 0.6609203
cg00000948 0.9026244

Total number of rows: 485577

Table truncated, full table size 10016 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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