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Sample GSM1572872 Query DataSets for GSM1572872
Status Public on Jun 03, 2015
Title Parietal of subject 365 (Sample32)
Sample type genomic
 
Source name Brain Parietal
Organism Homo sapiens
Characteristics tissue: Brain Parietal
subject id: 365
Sex: M
predicted gender: male
age: 64
dna methylation age: 55.2614682604709
age acceleration with respect to noncerebellar samples: 2.75349107423455
cor sample vs gold standard: 0.887848874291433
mean abs difference sample vs gold standard: 0.0861622838470749
postmortem interval: 17
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.4713015
cg00000108 0.8443188
cg00000109 0.6983157
cg00000165 0.1840302
cg00000236 0.8272263
cg00000289 0.473384
cg00000292 0.668009
cg00000321 0.4541422
cg00000363 0.1387678
cg00000622 0.02354509
cg00000658 0.7742437
cg00000714 0.1255869
cg00000721 0.8419599
cg00000734 0.06428133
cg00000769 0.0426365
cg00000807 0.877504
cg00000884 0.7568678
cg00000905 0.1067044
cg00000924 0.6273279
cg00000948 0.8962753

Total number of rows: 485577

Table truncated, full table size 10025 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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