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Sample GSM1572869 Query DataSets for GSM1572869
Status Public on Jun 03, 2015
Title Motor Cortex of subject 365 (Sample29)
Sample type genomic
Source name Brain Motor Cortex
Organism Homo sapiens
Characteristics tissue: Brain Motor Cortex
subject id: 365
Sex: M
predicted gender: male
age: 64
dna methylation age: 48.1758185868493
age acceleration with respect to noncerebellar samples: -4.33215859938704
cor sample vs gold standard: 0.88364189728031
mean abs difference sample vs gold standard: 0.0885527426990753
postmortem interval: 17
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.391027
cg00000108 0.6472588
cg00000109 0.3231586
cg00000165 0.1787899
cg00000236 0.5542014
cg00000289 0.340348
cg00000292 0.6873295
cg00000321 0.4677849
cg00000363 0.1267023
cg00000622 0.01371597
cg00000658 0.6934999
cg00000714 0.1026667
cg00000721 0.6231454
cg00000734 0.06702785
cg00000769 0.04149811
cg00000807 0.8712614
cg00000884 0.5988428
cg00000905 0.1473414
cg00000924 0.6039897
cg00000948 0.9047902

Total number of rows: 485577

Table truncated, full table size 10030 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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