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Sample GSM1572868 Query DataSets for GSM1572868
Status Public on Jun 03, 2015
Title Temporal of subject 239 (Sample28)
Sample type genomic
Source name Brain Temporal
Organism Homo sapiens
Characteristics tissue: Brain Temporal
subject id: 239
Sex: F
predicted gender: female
age: 100
dna methylation age: 77.9091949324239
age acceleration with respect to noncerebellar samples: 1.80274112710174
cor sample vs gold standard: 0.892425214664743
mean abs difference sample vs gold standard: 0.0838517503490085
postmortem interval: 26
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.459904
cg00000108 0.8824617
cg00000109 0.5991437
cg00000165 0.125
cg00000236 0.7795877
cg00000289 0.4644212
cg00000292 0.6150567
cg00000321 0.4853128
cg00000363 0.1047325
cg00000622 0.01657816
cg00000658 0.8164818
cg00000714 0.08281398
cg00000721 0.8686538
cg00000734 0.04582054
cg00000769 0.03979933
cg00000807 0.8995381
cg00000884 0.7411398
cg00000905 0.07150452
cg00000924 0.6460247
cg00000948 0.9053215

Total number of rows: 485577

Table truncated, full table size 10032 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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