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Sample GSM1572865 Query DataSets for GSM1572865
Status Public on Jun 03, 2015
Title Temporal of subject 215 (Sample25)
Sample type genomic
 
Source name Brain Temporal
Organism Homo sapiens
Characteristics tissue: Brain Temporal
subject id: 215
Sex: F
predicted gender: female
age: 38
dna methylation age: 31.0261503653151
age acceleration with respect to noncerebellar samples: -4.43848259602593
cor sample vs gold standard: 0.894211276117147
mean abs difference sample vs gold standard: 0.084468239764576
postmortem interval: 24
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.4370148
cg00000108 0.7913718
cg00000109 0.692974
cg00000165 0.2037769
cg00000236 0.6588265
cg00000289 0.4
cg00000292 0.7358992
cg00000321 0.509952
cg00000363 0.1740408
cg00000622 0.031082
cg00000658 0.8104265
cg00000714 0.1093948
cg00000721 0.8814283
cg00000734 0.07293964
cg00000769 0.04437057
cg00000807 0.9076485
cg00000884 0.6844715
cg00000905 0.1293808
cg00000924 0.6254153
cg00000948 0.9124569

Total number of rows: 485577

Table truncated, full table size 10021 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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