GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1572863 Query DataSets for GSM1572863
Status Public on Jun 03, 2015
Title Motor Cortex of subject 315 (Sample23)
Sample type genomic
Source name Brain Motor Cortex
Organism Homo sapiens
Characteristics tissue: Brain Motor Cortex
subject id: 315
Sex: F
predicted gender: female
age: 63
dna methylation age: 49.9720547783136
age acceleration with respect to noncerebellar samples: -1.8804091685037
cor sample vs gold standard: 0.891653726868351
mean abs difference sample vs gold standard: 0.0839250365658388
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.482243
cg00000108 0.8814419
cg00000109 0.7149358
cg00000165 0.2040134
cg00000236 0.7877914
cg00000289 0.4174438
cg00000292 0.7499384
cg00000321 0.5231219
cg00000363 0.1563836
cg00000622 0.01430988
cg00000658 0.8481738
cg00000714 0.08687342
cg00000721 0.9265092
cg00000734 0.05241667
cg00000769 0.0393713
cg00000807 0.9039545
cg00000884 0.7876359
cg00000905 0.07066628
cg00000924 0.6726373
cg00000948 0.9131684

Total number of rows: 485577

Table truncated, full table size 10033 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap