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Sample GSM1572862 Query DataSets for GSM1572862
Status Public on Jun 03, 2015
Title Occipital of subject 149 (Sample22)
Sample type genomic
Source name Brain Occipital
Organism Homo sapiens
Characteristics tissue: Brain Occipital
subject id: 149
Sex: M
predicted gender: male
age: 64
dna methylation age: 46.7680256987467
age acceleration with respect to noncerebellar samples: -5.73995148748965
cor sample vs gold standard: 0.90162363980012
mean abs difference sample vs gold standard: 0.0794380843931426
postmortem interval: 29
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3141176
cg00000108 0.8400865
cg00000109 0.5498199
cg00000165 0.2229219
cg00000236 0.6395093
cg00000289 0.462963
cg00000292 0.7005717
cg00000321 0.4102908
cg00000363 0.165692
cg00000622 0.01145622
cg00000658 0.8063692
cg00000714 0.09588607
cg00000721 0.8989954
cg00000734 0.05892564
cg00000769 0.03848401
cg00000807 0.9167935
cg00000884 0.7638847
cg00000905 0.1581826
cg00000924 0.6637663
cg00000948 0.8971412

Total number of rows: 485577

Table truncated, full table size 10034 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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