NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1572861 Query DataSets for GSM1572861
Status Public on Jun 03, 2015
Title Frontal of subject 513 (Sample21)
Sample type genomic
 
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 513
Sex: M
predicted gender: male
age: 41
dna methylation age: 36.1180520505965
age acceleration with respect to noncerebellar samples: -1.31312062900168
cor sample vs gold standard: 0.890992655406659
mean abs difference sample vs gold standard: 0.0830664723481079
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.3746731
cg00000108 0.8679478
cg00000109 0.6534821
cg00000165 0.1601715
cg00000236 0.7547426
cg00000289 0.4740385
cg00000292 0.7365133
cg00000321 0.5285736
cg00000363 0.1459124
cg00000622 0.02034467
cg00000658 0.7846226
cg00000714 0.1113165
cg00000721 0.8871228
cg00000734 0.06145376
cg00000769 0.04000295
cg00000807 0.8842403
cg00000884 0.7380711
cg00000905 0.09841047
cg00000924 0.6169063
cg00000948 0.9227626

Total number of rows: 485577

Table truncated, full table size 10035 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap