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Sample GSM1572859 Query DataSets for GSM1572859
Status Public on Jun 03, 2015
Title Frontal of subject 149 (Sample19)
Sample type genomic
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 149
Sex: M
predicted gender: male
age: 64
dna methylation age: 50.5871671048374
age acceleration with respect to noncerebellar samples: -1.92081008139895
cor sample vs gold standard: 0.89405604805933
mean abs difference sample vs gold standard: 0.0848080389476591
postmortem interval: 29
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4307229
cg00000108 0.8733228
cg00000109 0.7105802
cg00000165 0.1649866
cg00000236 0.8079291
cg00000289 0.5476261
cg00000292 0.6487914
cg00000321 0.4748129
cg00000363 0.1337637
cg00000622 0.01835802
cg00000658 0.8359399
cg00000714 0.09731261
cg00000721 0.897289
cg00000734 0.07488362
cg00000769 0.05431177
cg00000807 0.9033285
cg00000884 0.7912128
cg00000905 0.06845361
cg00000924 0.6347507
cg00000948 0.9062002

Total number of rows: 485577

Table truncated, full table size 10034 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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