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Sample GSM1572858 Query DataSets for GSM1572858
Status Public on Jun 03, 2015
Title Temporal of subject 107 (Sample18)
Sample type genomic
Source name Brain Temporal
Organism Homo sapiens
Characteristics tissue: Brain Temporal
subject id: 107
Sex: F
predicted gender: female
age: 114
dna methylation age: 76.9492842728123
age acceleration with respect to noncerebellar samples: -8.33435488437657
cor sample vs gold standard: 0.908325012952566
mean abs difference sample vs gold standard: 0.0822720201645218
postmortem interval: 13
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4023596
cg00000108 0.7707081
cg00000109 0.7682489
cg00000165 0.1661511
cg00000236 0.7796063
cg00000289 0.5783316
cg00000292 0.6168923
cg00000321 0.4070996
cg00000363 0.1652725
cg00000622 0.02161712
cg00000658 0.8100672
cg00000714 0.1066357
cg00000721 0.8709573
cg00000734 0.0858999
cg00000769 0.0683811
cg00000807 0.8624148
cg00000884 0.812162
cg00000905 0.08649789
cg00000924 0.6680046
cg00000948 0.898864

Total number of rows: 485577

Table truncated, full table size 10024 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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