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Sample GSM1572855 Query DataSets for GSM1572855
Status Public on Jun 03, 2015
Title Hippocampus of subject 131 (Sample15)
Sample type genomic
 
Source name Brain Hippocampus
Organism Homo sapiens
Characteristics tissue: Brain Hippocampus
subject id: 131
Sex: F
predicted gender: female
age: 111
dna methylation age: 79.8114328201583
age acceleration with respect to noncerebellar samples: -3.5056666187734
cor sample vs gold standard: 0.907410139238426
mean abs difference sample vs gold standard: 0.0806243926886681
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.4733694
cg00000108 0.8457372
cg00000109 0.7410062
cg00000165 0.1621622
cg00000236 0.807048
cg00000289 0.6479095
cg00000292 0.7099392
cg00000321 0.3136626
cg00000363 0.1542206
cg00000622 0.02670099
cg00000658 0.8434059
cg00000714 0.1083899
cg00000721 0.9086435
cg00000734 0.07127802
cg00000769 0.04063475
cg00000807 0.8673203
cg00000884 0.7980099
cg00000905 0.07060248
cg00000924 0.5872528
cg00000948 0.9286766

Total number of rows: 485577

Table truncated, full table size 10033 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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