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Sample GSM1572854 Query DataSets for GSM1572854
Status Public on Jun 03, 2015
Title CRBM of subject 339 (Sample14)
Sample type genomic
Source name Brain CRBM
Organism Homo sapiens
Characteristics tissue: Brain CRBM
subject id: 339
Sex: F
predicted gender: female
age: 80
dna methylation age: 58.3982915393238
age acceleration with respect to noncerebellar samples: -4.59789747761735
cor sample vs gold standard: 0.833663269666406
mean abs difference sample vs gold standard: 0.0989116234730345
postmortem interval: 10
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.6630296
cg00000108 0.5279837
cg00000109 0.8535211
cg00000165 0.6472347
cg00000236 0.7226951
cg00000289 0.5220077
cg00000292 0.6668789
cg00000321 0.1985615
cg00000363 0.09205021
cg00000622 0.02135302
cg00000658 0.8083304
cg00000714 0.04432599
cg00000721 0.887311
cg00000734 0.06107593
cg00000769 0.03496392
cg00000807 0.91049
cg00000884 0.7926484
cg00000905 0.1035117
cg00000924 0.6700516
cg00000948 0.9139656

Total number of rows: 485577

Table truncated, full table size 10054 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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