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Sample GSM1572853 Query DataSets for GSM1572853
Status Public on Jun 03, 2015
Title Visual Cortex of subject 71 (Sample13)
Sample type genomic
Source name Brain Visual Cortex
Organism Homo sapiens
Characteristics tissue: Brain Visual Cortex
subject id: 71
Sex: M
predicted gender: male
age: 53
dna methylation age: 46.6107532229382
age acceleration with respect to noncerebellar samples: 1.31342167031141
cor sample vs gold standard: 0.886384165951358
mean abs difference sample vs gold standard: 0.0856021713536337
postmortem interval: 16.5
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5354174
cg00000108 0.9040209
cg00000109 0.7078236
cg00000165 0.1090678
cg00000236 0.750259
cg00000289 0.5344449
cg00000292 0.6566584
cg00000321 0.4967374
cg00000363 0.1462659
cg00000622 0.02690563
cg00000658 0.7868373
cg00000714 0.120548
cg00000721 0.8939816
cg00000734 0.05296999
cg00000769 0.04507883
cg00000807 0.8933918
cg00000884 0.7470788
cg00000905 0.05525228
cg00000924 0.5705683
cg00000948 0.9100793

Total number of rows: 485577

Table truncated, full table size 10045 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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