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Sample GSM1572852 Query DataSets for GSM1572852
Status Public on Jun 03, 2015
Title Parietal of subject 283 (Sample12)
Sample type genomic
Source name Brain Parietal
Organism Homo sapiens
Characteristics tissue: Brain Parietal
subject id: 283
Sex: M
predicted gender: male
age: 32
dna methylation age: 25.3624046553019
age acceleration with respect to noncerebellar samples: -6.16914886952483
cor sample vs gold standard: 0.888842731867375
mean abs difference sample vs gold standard: 0.0847428016607144
postmortem interval: 13
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3502703
cg00000108 0.8732117
cg00000109 0.7106485
cg00000165 0.1120944
cg00000236 0.7954693
cg00000289 0.5618672
cg00000292 0.7578751
cg00000321 0.4581582
cg00000363 0.09879373
cg00000622 0.01460829
cg00000658 0.8115834
cg00000714 0.06512172
cg00000721 0.8873354
cg00000734 0.05704307
cg00000769 0.0408443
cg00000807 0.9010428
cg00000884 0.810977
cg00000905 0.0638914
cg00000924 0.6197221
cg00000948 0.887273

Total number of rows: 485577

Table truncated, full table size 10045 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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