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Sample GSM1572851 Query DataSets for GSM1572851
Status Public on Jun 03, 2015
Title CRBM of subject 215 (Sample11)
Sample type genomic
Source name Brain CRBM
Organism Homo sapiens
Characteristics tissue: Brain CRBM
subject id: 215
Sex: F
predicted gender: female
age: 38
dna methylation age: 34.7295266258435
age acceleration with respect to noncerebellar samples: -0.735106335497534
cor sample vs gold standard: 0.834986437970323
mean abs difference sample vs gold standard: 0.0996112771591373
postmortem interval: 24
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.6569395
cg00000108 0.445932
cg00000109 0.8741379
cg00000165 0.347335
cg00000236 0.7425914
cg00000289 0.4591069
cg00000292 0.620324
cg00000321 0.2758754
cg00000363 0.08345407
cg00000622 0.01951472
cg00000658 0.7836885
cg00000714 0.04578183
cg00000721 0.9322085
cg00000734 0.05277597
cg00000769 0.0396603
cg00000807 0.9343958
cg00000884 0.7845854
cg00000905 0.08147369
cg00000924 0.623621
cg00000948 0.8929669

Total number of rows: 485577

Table truncated, full table size 10056 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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