GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1572849 Query DataSets for GSM1572849
Status Public on Jun 03, 2015
Title CRBM of subject 254 (Sample9)
Sample type genomic
Source name Brain CRBM
Organism Homo sapiens
Characteristics tissue: Brain CRBM
subject id: 254
Sex: F
predicted gender: female
age: 93
dna methylation age: 64.2960375152609
age acceleration with respect to noncerebellar samples: -7.22182361412791
cor sample vs gold standard: 0.834905830647615
mean abs difference sample vs gold standard: 0.098958953037182
postmortem interval: 4
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.6736275
cg00000108 0.582298
cg00000109 0.7819732
cg00000165 0.6817349
cg00000236 0.6475603
cg00000289 0.5483871
cg00000292 0.5973404
cg00000321 0.1678865
cg00000363 0.06211528
cg00000622 0.01783071
cg00000658 0.8232152
cg00000714 0.04134936
cg00000721 0.9072785
cg00000734 0.04636192
cg00000769 0.04448424
cg00000807 0.9093398
cg00000884 0.808322
cg00000905 0.05812088
cg00000924 0.6330564
cg00000948 0.9063827

Total number of rows: 485577

Table truncated, full table size 10061 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap