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Sample GSM1572848 Query DataSets for GSM1572848
Status Public on Jun 03, 2015
Title Temporal of subject 7 (Sample8)
Sample type genomic
 
Source name Brain Temporal
Organism Homo sapiens
Characteristics tissue: Brain Temporal
subject id: 7
Sex: M
predicted gender: male
age: 80
dna methylation age: 60.9600913115455
age acceleration with respect to noncerebellar samples: -2.03609770539565
cor sample vs gold standard: 0.903994669472385
mean abs difference sample vs gold standard: 0.0832441549422943
postmortem interval: 22
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.3748373
cg00000108 0.8862379
cg00000109 0.6801178
cg00000165 0.2172544
cg00000236 0.7491857
cg00000289 0.3929525
cg00000292 0.7066969
cg00000321 0.4778841
cg00000363 0.1354086
cg00000622 0.02953712
cg00000658 0.8017629
cg00000714 0.0848851
cg00000721 0.8438898
cg00000734 0.06955241
cg00000769 0.038749
cg00000807 0.8734075
cg00000884 0.7349537
cg00000905 0.1157008
cg00000924 0.6403587
cg00000948 0.8962149

Total number of rows: 485577

Table truncated, full table size 10019 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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