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Sample GSM1572844 Query DataSets for GSM1572844
Status Public on Jun 03, 2015
Title Occipital of subject 487 (Sample4)
Sample type genomic
Source name Brain Occipital
Organism Homo sapiens
Characteristics tissue: Brain Occipital
subject id: 487
Sex: F
predicted gender: female
age: 112
dna methylation age: 76.5355815602396
age acceleration with respect to noncerebellar samples: -7.43703111811116
cor sample vs gold standard: 0.880579819902235
mean abs difference sample vs gold standard: 0.0876224895748787
postmortem interval: NA
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.49197
cg00000108 0.8821322
cg00000109 0.7483917
cg00000165 0.1571795
cg00000236 0.7762376
cg00000289 0.6465603
cg00000292 0.6328958
cg00000321 0.3842063
cg00000363 0.1144284
cg00000622 0.009512337
cg00000658 0.7869743
cg00000714 0.08016099
cg00000721 0.8786482
cg00000734 0.06834031
cg00000769 0.03970021
cg00000807 0.900657
cg00000884 0.7914749
cg00000905 0.08782578
cg00000924 0.624122
cg00000948 0.9153801

Total number of rows: 485577

Table truncated, full table size 10039 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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