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Sample GSM1572842 Query DataSets for GSM1572842
Status Public on Jun 03, 2015
Title Occipital of subject 107 (Sample2)
Sample type genomic
Source name Brain Occipital
Organism Homo sapiens
Characteristics tissue: Brain Occipital
subject id: 107
Sex: F
predicted gender: female
age: 114
dna methylation age: 73.6527744473169
age acceleration with respect to noncerebellar samples: -11.630864709872
cor sample vs gold standard: 0.892442060249138
mean abs difference sample vs gold standard: 0.0836201926912586
postmortem interval: 13
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3555139
cg00000108 0.903384
cg00000109 0.6912687
cg00000165 0.1855972
cg00000236 0.7680058
cg00000289 0.4673684
cg00000292 0.707917
cg00000321 0.5205626
cg00000363 0.1269548
cg00000622 0.02172614
cg00000658 0.8142167
cg00000714 0.07725968
cg00000721 0.8420079
cg00000734 0.04244384
cg00000769 0.05352564
cg00000807 0.8983408
cg00000884 0.8218943
cg00000905 0.07292933
cg00000924 0.6064989
cg00000948 0.8951126

Total number of rows: 485577

Table truncated, full table size 10036 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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