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Sample GSM1572442 Query DataSets for GSM1572442
Status Public on Jun 03, 2015
Title genomic DNA from Blood of a 112 year old female subject (Sample61)
Sample type genomic
Source name Blood
Organism Homo sapiens
Characteristics tissue: Blood
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 100.113142336701
cor sample vs gold standard: 0.959000699920335
mean abs difference sample vs gold standard: 0.0620938131669967
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3181236
cg00000108 0.9265087
cg00000109 0.7977762
cg00000165 0.1768519
cg00000236 0.7808636
cg00000289 0.48
cg00000292 0.8255713
cg00000321 0.3978128
cg00000363 0.3680008
cg00000622 0.02623616
cg00000658 0.7893476
cg00000714 0.1428812
cg00000721 0.8775458
cg00000734 0.058454
cg00000769 0.04001674
cg00000807 0.6994987
cg00000884 0.7813922
cg00000905 0.09722765
cg00000924 0.6011563
cg00000948 0.8412036

Total number of rows: 485577

Table truncated, full table size 10030 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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