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Sample GSM1572440 Query DataSets for GSM1572440
Status Public on Jun 03, 2015
Title genomic DNA from BrainFrontal of a 112 year old female subject (Sample59)
Sample type genomic
Source name BrainFrontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 78.6667129145576
cor sample vs gold standard: 0.89320339003946
mean abs difference sample vs gold standard: 0.0844032419710064
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4975912
cg00000108 0.8772691
cg00000109 0.7185556
cg00000165 0.2064777
cg00000236 0.7936419
cg00000289 0.4420875
cg00000292 0.635165
cg00000321 0.41246
cg00000363 0.1170832
cg00000622 0.02596378
cg00000658 0.7618921
cg00000714 0.0921274
cg00000721 0.8815017
cg00000734 0.07166483
cg00000769 0.04405724
cg00000807 0.8985277
cg00000884 0.7568875
cg00000905 0.07836235
cg00000924 0.6263123
cg00000948 0.89688

Total number of rows: 485577

Table truncated, full table size 10032 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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