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Sample GSM1572439 Query DataSets for GSM1572439
Status Public on Jun 03, 2015
Title genomic DNA from Esophagus of a 112 year old female subject (Sample58)
Sample type genomic
Source name Esophagus
Organism Homo sapiens
Characteristics tissue: Esophagus
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 97.0420442261379
cor sample vs gold standard: 0.905453862255798
mean abs difference sample vs gold standard: 0.0825073309196968
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.2953195
cg00000108 0.8593484
cg00000109 0.7550969
cg00000165 0.209905
cg00000236 0.7538693
cg00000289 0.3849135
cg00000292 0.5468509
cg00000321 0.2669631
cg00000363 0.1709673
cg00000622 0.01035384
cg00000658 0.738568
cg00000714 0.1063093
cg00000721 0.8803192
cg00000734 0.05997653
cg00000769 0.04548446
cg00000807 0.7749094
cg00000884 0.74705
cg00000905 0.07558835
cg00000924 0.5938712
cg00000948 0.8501098

Total number of rows: 485577

Table truncated, full table size 10034 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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