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Sample GSM1572437 Query DataSets for GSM1572437
Status Public on Jun 03, 2015
Title genomic DNA from Thyroid of a 112 year old female subject (Sample56)
Sample type genomic
Source name Thyroid
Organism Homo sapiens
Characteristics tissue: Thyroid
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 89.3578128285496
cor sample vs gold standard: 0.921081363847432
mean abs difference sample vs gold standard: 0.0783097597244341
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3196745
cg00000108 0.8226928
cg00000109 0.6936593
cg00000165 0.2071749
cg00000236 0.7091811
cg00000289 0.475416
cg00000292 0.6296561
cg00000321 0.3265913
cg00000363 0.2297836
cg00000622 0.02358528
cg00000658 0.8184276
cg00000714 0.1223666
cg00000721 0.8793364
cg00000734 0.06315431
cg00000769 0.05381897
cg00000807 0.8465952
cg00000884 0.8066424
cg00000905 0.1266304
cg00000924 0.676205
cg00000948 0.8694497

Total number of rows: 485577

Table truncated, full table size 10018 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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