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Sample GSM1572431 Query DataSets for GSM1572431
Status Public on Jun 03, 2015
Title genomic DNA from Kidney of a 112 year old female subject (Sample50)
Sample type genomic
Source name Kidney
Organism Homo sapiens
Characteristics tissue: Kidney
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 85.2381308595816
cor sample vs gold standard: 0.914900334784355
mean abs difference sample vs gold standard: 0.0798565709360119
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.286933
cg00000108 0.9021561
cg00000109 0.7373965
cg00000165 0.1857339
cg00000236 0.7340224
cg00000289 0.5399883
cg00000292 0.5846597
cg00000321 0.3460024
cg00000363 0.2178723
cg00000622 0.04053702
cg00000658 0.7583412
cg00000714 0.1336522
cg00000721 0.8830543
cg00000734 0.06185176
cg00000769 0.02821719
cg00000807 0.7488685
cg00000884 0.8158043
cg00000905 0.07328222
cg00000924 0.6218796
cg00000948 0.8770263

Total number of rows: 485577

Table truncated, full table size 10028 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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