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Sample GSM1572426 Query DataSets for GSM1572426
Status Public on Jun 03, 2015
Title genomic DNA from Adrenal of a 112 year old female subject (Sample45)
Sample type genomic
 
Source name Adrenal
Organism Homo sapiens
Characteristics tissue: Adrenal
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 89.8643323865804
cor sample vs gold standard: 0.937239554110571
mean abs difference sample vs gold standard: 0.0768999332203435
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.4257567
cg00000108 0.9173019
cg00000109 0.7702765
cg00000165 0.2522026
cg00000236 0.7726017
cg00000289 0.4707352
cg00000292 0.6936098
cg00000321 0.3619577
cg00000363 0.2589182
cg00000622 0.02275779
cg00000658 0.8102558
cg00000714 0.170826
cg00000721 0.9133475
cg00000734 0.05357488
cg00000769 0.03276381
cg00000807 0.7235827
cg00000884 0.8159222
cg00000905 0.1020538
cg00000924 0.6683142
cg00000948 0.8761153

Total number of rows: 485577

Table truncated, full table size 10015 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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