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Sample GSM1572423 Query DataSets for GSM1572423
Status Public on Jun 03, 2015
Title genomic DNA from Heart of a 112 year old female subject (Sample42)
Sample type genomic
Source name Heart
Organism Homo sapiens
Characteristics tissue: Heart
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 92.5879976508508
cor sample vs gold standard: 0.909539695497572
mean abs difference sample vs gold standard: 0.0779923742023426
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.2192175
cg00000108 0.8999801
cg00000109 0.5805647
cg00000165 0.1921652
cg00000236 0.7391304
cg00000289 0.5218729
cg00000292 0.6620922
cg00000321 0.2372835
cg00000363 0.2030007
cg00000622 0.0238806
cg00000658 0.8254898
cg00000714 0.08638581
cg00000721 0.8478718
cg00000734 0.04813697
cg00000769 0.03525789
cg00000807 0.823796
cg00000884 0.7756301
cg00000905 0.0612108
cg00000924 0.6213959
cg00000948 0.9036634

Total number of rows: 485577

Table truncated, full table size 10044 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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