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Sample GSM1572420 Query DataSets for GSM1572420
Status Public on Jun 03, 2015
Title genomic DNA from BoneMarrow of a 112 year old female subject (Sample39)
Sample type genomic
Source name BoneMarrow
Organism Homo sapiens
Characteristics tissue: Bone Marrow
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 101.403949045109
cor sample vs gold standard: 0.949636307270201
mean abs difference sample vs gold standard: 0.074326924997449
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3672039
cg00000108 0.8643233
cg00000109 0.7396489
cg00000165 0.3234286
cg00000236 0.7307029
cg00000289 0.4287234
cg00000292 0.6733994
cg00000321 0.380325
cg00000363 0.4137011
cg00000622 0.03047299
cg00000658 0.7698413
cg00000714 0.1464016
cg00000721 0.8310386
cg00000734 0.0896052
cg00000769 0.04931728
cg00000807 0.6733329
cg00000884 0.7293782
cg00000905 0.1594628
cg00000924 0.6353579
cg00000948 0.8256169

Total number of rows: 485577

Table truncated, full table size 10008 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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