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Sample GSM1572419 Query DataSets for GSM1572419
Status Public on Jun 03, 2015
Title genomic DNA from Bone of a 112 year old female subject (Sample38)
Sample type genomic
 
Source name Bone
Organism Homo sapiens
Characteristics tissue: Bone
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 107.608464718391
cor sample vs gold standard: 0.956061862897733
mean abs difference sample vs gold standard: 0.0687202541833125
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.4404176
cg00000108 0.8815488
cg00000109 0.6965689
cg00000165 0.2180901
cg00000236 0.6880614
cg00000289 0.4854967
cg00000292 0.7505829
cg00000321 0.3224081
cg00000363 0.3925766
cg00000622 0.02447136
cg00000658 0.7759436
cg00000714 0.1313788
cg00000721 0.8885671
cg00000734 0.06900531
cg00000769 0.04656564
cg00000807 0.7102858
cg00000884 0.8028681
cg00000905 0.1296913
cg00000924 0.5970548
cg00000948 0.8062345

Total number of rows: 485577

Table truncated, full table size 10017 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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