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Sample GSM1572418 Query DataSets for GSM1572418
Status Public on Jun 03, 2015
Title genomic DNA from Adipose of a 112 year old female subject (Sample37)
Sample type genomic
Source name Adipose
Organism Homo sapiens
Characteristics tissue: Adipose
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 82.4690419263243
cor sample vs gold standard: 0.914746100164139
mean abs difference sample vs gold standard: 0.079807685317465
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.1900775
cg00000108 0.891612
cg00000109 0.6718569
cg00000165 0.2739009
cg00000236 0.7750092
cg00000289 0.5422535
cg00000292 0.5708861
cg00000321 0.2732342
cg00000363 0.2264085
cg00000622 0.02289157
cg00000658 0.7910479
cg00000714 0.1208693
cg00000721 0.910137
cg00000734 0.06250442
cg00000769 0.03893561
cg00000807 0.8257902
cg00000884 0.8172771
cg00000905 0.1463361
cg00000924 0.659147
cg00000948 0.8826793

Total number of rows: 485577

Table truncated, full table size 10023 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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