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Sample GSM1572410 Query DataSets for GSM1572410
Status Public on Jun 03, 2015
Title genomic DNA from Adrenal of a 112 year old female subject (Sample29)
Sample type genomic
Source name Adrenal
Organism Homo sapiens
Characteristics tissue: Adrenal
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 80.6071066359821
cor sample vs gold standard: 0.91791586796091
mean abs difference sample vs gold standard: 0.0768160158866799
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.2146756
cg00000108 0.9151937
cg00000109 0.8211105
cg00000165 0.168967
cg00000236 0.818078
cg00000289 0.561908
cg00000292 0.7083762
cg00000321 0.3542786
cg00000363 0.2474606
cg00000622 0.01603111
cg00000658 0.7847347
cg00000714 0.09619447
cg00000721 0.8934956
cg00000734 0.04513212
cg00000769 0.05328513
cg00000807 0.7876526
cg00000884 0.8459904
cg00000905 0.06802342
cg00000924 0.7072055
cg00000948 0.8830196

Total number of rows: 485577

Table truncated, full table size 10037 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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