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Sample GSM1572409 Query DataSets for GSM1572409
Status Public on Jun 03, 2015
Title genomic DNA from Pancreas of a 112 year old female subject (Sample28)
Sample type genomic
 
Source name Pancreas
Organism Homo sapiens
Characteristics tissue: Pancreas
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 86.2710573435831
cor sample vs gold standard: 0.916389655721938
mean abs difference sample vs gold standard: 0.077452131560242
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.3014907
cg00000108 0.917435
cg00000109 0.7845374
cg00000165 0.1617418
cg00000236 0.748877
cg00000289 0.6805623
cg00000292 0.6406322
cg00000321 0.3812189
cg00000363 0.2214152
cg00000622 0.01157223
cg00000658 0.7975524
cg00000714 0.1273369
cg00000721 0.9300576
cg00000734 0.05161376
cg00000769 0.02752294
cg00000807 0.7819285
cg00000884 0.8348986
cg00000905 0.07304735
cg00000924 0.6616643
cg00000948 0.8917621

Total number of rows: 485577

Table truncated, full table size 10036 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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