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Sample GSM1572408 Query DataSets for GSM1572408
Status Public on Jun 03, 2015
Title genomic DNA from LymphNodes of a 112 year old female subject (Sample27)
Sample type genomic
Source name LymphNodes
Organism Homo sapiens
Characteristics tissue: LymphNodes
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 84.1814808650746
cor sample vs gold standard: 0.937993615921953
mean abs difference sample vs gold standard: 0.0729141856970374
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5390573
cg00000108 0.9097713
cg00000109 0.8131946
cg00000165 0.2464762
cg00000236 0.7490861
cg00000289 0.4462651
cg00000292 0.7492801
cg00000321 0.3499271
cg00000363 0.3695298
cg00000622 0.0140922
cg00000658 0.8262924
cg00000714 0.1540347
cg00000721 0.9068818
cg00000734 0.04187886
cg00000769 0.02434354
cg00000807 0.7504824
cg00000884 0.8144397
cg00000905 0.08753587
cg00000924 0.6176897
cg00000948 0.7993865

Total number of rows: 485577

Table truncated, full table size 10033 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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