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Sample GSM1572407 Query DataSets for GSM1572407
Status Public on Jun 03, 2015
Title genomic DNA from Heart of a 112 year old female subject (Sample26)
Sample type genomic
Source name Heart
Organism Homo sapiens
Characteristics tissue: Heart
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 87.0977493070311
cor sample vs gold standard: 0.926096152493242
mean abs difference sample vs gold standard: 0.0730681361145956
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.2128688
cg00000108 0.9335627
cg00000109 0.7081712
cg00000165 0.2042738
cg00000236 0.7628625
cg00000289 0.5797528
cg00000292 0.6931207
cg00000321 0.266937
cg00000363 0.2097771
cg00000622 0.01377815
cg00000658 0.8219762
cg00000714 0.1030272
cg00000721 0.8629885
cg00000734 0.04777008
cg00000769 0.04182263
cg00000807 0.7641053
cg00000884 0.7800621
cg00000905 0.06764766
cg00000924 0.6390814
cg00000948 0.8866783

Total number of rows: 485577

Table truncated, full table size 10042 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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