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Sample GSM1572406 Query DataSets for GSM1572406
Status Public on Jun 03, 2015
Title genomic DNA from Colon of a 112 year old female subject (Sample25)
Sample type genomic
Source name Colon
Organism Homo sapiens
Characteristics tissue: Colon
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 85.5828141746574
cor sample vs gold standard: 0.8886209812979
mean abs difference sample vs gold standard: 0.084485117395492
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.1678515
cg00000108 0.9158329
cg00000109 0.7636502
cg00000165 0.09637144
cg00000236 0.6214285
cg00000289 0.4600654
cg00000292 0.570994
cg00000321 0.4035615
cg00000363 0.1420548
cg00000622 0.003410272
cg00000658 0.791303
cg00000714 0.05115506
cg00000721 0.9625151
cg00000734 0.03855167
cg00000769 0.03573754
cg00000807 0.8689805
cg00000884 0.7764017
cg00000905 0.05568054
cg00000924 0.6501579
cg00000948 0.9123263

Total number of rows: 485577

Table truncated, full table size 10052 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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