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Sample GSM1572400 Query DataSets for GSM1572400
Status Public on Jun 03, 2015
Title genomic DNA from BrainFrontal of a 112 year old female subject (Sample19)
Sample type genomic
Source name BrainFrontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 80.4741924238426
cor sample vs gold standard: 0.905993901398241
mean abs difference sample vs gold standard: 0.0812224952292461
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3948253
cg00000108 0.820189
cg00000109 0.7827273
cg00000165 0.1903193
cg00000236 0.7604736
cg00000289 0.6067678
cg00000292 0.560298
cg00000321 0.3102095
cg00000363 0.1568137
cg00000622 0.01763078
cg00000658 0.8031774
cg00000714 0.08753407
cg00000721 0.9213654
cg00000734 0.06102953
cg00000769 0.05113962
cg00000807 0.8446925
cg00000884 0.8319356
cg00000905 0.08388437
cg00000924 0.6530201
cg00000948 0.8857335

Total number of rows: 485577

Table truncated, full table size 10035 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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