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Sample GSM1572399 Query DataSets for GSM1572399
Status Public on Jun 03, 2015
Title genomic DNA from Esophagus of a 112 year old female subject (Sample18)
Sample type genomic
Source name Esophagus
Organism Homo sapiens
Characteristics tissue: Esophagus
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 99.9363619893838
cor sample vs gold standard: 0.910284429889249
mean abs difference sample vs gold standard: 0.0822605329010111
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3923453
cg00000108 0.8925858
cg00000109 0.7835631
cg00000165 0.2094288
cg00000236 0.8077211
cg00000289 0.553322
cg00000292 0.5697237
cg00000321 0.3390465
cg00000363 0.2019759
cg00000622 0.02102426
cg00000658 0.7955555
cg00000714 0.1018761
cg00000721 0.9207512
cg00000734 0.05676144
cg00000769 0.047147
cg00000807 0.7570997
cg00000884 0.8011041
cg00000905 0.05284319
cg00000924 0.5889518
cg00000948 0.8665918

Total number of rows: 485577

Table truncated, full table size 10028 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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