GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1572397 Query DataSets for GSM1572397
Status Public on Jun 03, 2015
Title genomic DNA from Spleen of a 112 year old female subject (Sample16)
Sample type genomic
Source name Spleen
Organism Homo sapiens
Characteristics tissue: Spleen
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 78.7895448232341
cor sample vs gold standard: 0.934611465188166
mean abs difference sample vs gold standard: 0.0759799777165092
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4229337
cg00000108 0.9148484
cg00000109 0.7734197
cg00000165 0.2719241
cg00000236 0.7420833
cg00000289 0.5007519
cg00000292 0.7473516
cg00000321 0.3312021
cg00000363 0.3189734
cg00000622 0.009644599
cg00000658 0.8055366
cg00000714 0.1576931
cg00000721 0.8834665
cg00000734 0.05978999
cg00000769 0.03156817
cg00000807 0.5653358
cg00000884 0.7572955
cg00000905 0.09611344
cg00000924 0.6744777
cg00000948 0.8725078

Total number of rows: 485577

Table truncated, full table size 10023 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap