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Sample GSM1572393 Query DataSets for GSM1572393
Status Public on Jun 03, 2015
Title genomic DNA from BrainMidbrain of a 112 year old female subject (Sample12)
Sample type genomic
 
Source name BrainMidbrain
Organism Homo sapiens
Characteristics tissue: Brain MidBrain
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 93.0555486507555
cor sample vs gold standard: 0.907115151294011
mean abs difference sample vs gold standard: 0.0803339920636506
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.5033742
cg00000108 0.8671975
cg00000109 0.7209302
cg00000165 0.3956229
cg00000236 0.8472057
cg00000289 0.5141903
cg00000292 0.5347229
cg00000321 0.3347446
cg00000363 0.1537753
cg00000622 0.01454311
cg00000658 0.7910913
cg00000714 0.08608892
cg00000721 0.8584083
cg00000734 0.04901288
cg00000769 0.0460272
cg00000807 0.8965033
cg00000884 0.7862535
cg00000905 0.0640554
cg00000924 0.6417025
cg00000948 0.9057115

Total number of rows: 485577

Table truncated, full table size 10028 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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