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Sample GSM1572392 Query DataSets for GSM1572392
Status Public on Jun 03, 2015
Title genomic DNA from Liver of a 112 year old female subject (Sample11)
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics tissue: Liver
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 77.0066555621726
cor sample vs gold standard: 0.900052335110501
mean abs difference sample vs gold standard: 0.0837105534410018
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.28422
cg00000108 0.5631551
cg00000109 0.8360029
cg00000165 0.1837922
cg00000236 0.8020419
cg00000289 0.4500209
cg00000292 0.7740932
cg00000321 0.2684586
cg00000363 0.5585575
cg00000622 0.01520355
cg00000658 0.769263
cg00000714 0.1333884
cg00000721 0.8604311
cg00000734 0.05040937
cg00000769 0.04274683
cg00000807 0.7475955
cg00000884 0.7609654
cg00000905 0.07025761
cg00000924 0.6284242
cg00000948 0.8791308

Total number of rows: 485577

Table truncated, full table size 10025 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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