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Sample GSM1572389 Query DataSets for GSM1572389
Status Public on Jun 03, 2015
Title genomic DNA from Thyroid of a 112 year old female subject (Sample8)
Sample type genomic
Source name Thyroid
Organism Homo sapiens
Characteristics tissue: Thyroid
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 86.6384912297165
cor sample vs gold standard: 0.914300309450215
mean abs difference sample vs gold standard: 0.0847207765584416
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.2865605
cg00000108 0.8941066
cg00000109 0.783604
cg00000165 0.1957802
cg00000236 0.8367859
cg00000289 0.4118412
cg00000292 0.7612792
cg00000321 0.4297776
cg00000363 0.2181219
cg00000622 0.0230697
cg00000658 0.7937263
cg00000714 0.2484763
cg00000721 0.8748035
cg00000734 0.05685791
cg00000769 0.04697596
cg00000807 0.772359
cg00000884 0.8151765
cg00000905 0.08011146
cg00000924 0.6107457
cg00000948 0.8878071

Total number of rows: 485577

Table truncated, full table size 10016 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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