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Sample GSM1572388 Query DataSets for GSM1572388
Status Public on Jun 03, 2015
Title genomic DNA from Buccal of a 112 year old female subject (Sample7)
Sample type genomic
Source name Buccal
Organism Homo sapiens
Characteristics tissue: Buccal
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 94.8369502523354
cor sample vs gold standard: 0.893875053694429
mean abs difference sample vs gold standard: 0.0871542329045371
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.2838246
cg00000108 0.8924351
cg00000109 0.7868176
cg00000165 0.2474087
cg00000236 0.7842817
cg00000289 0.4976316
cg00000292 0.4762415
cg00000321 0.362588
cg00000363 0.2645441
cg00000622 0.01987415
cg00000658 0.7934254
cg00000714 0.1167133
cg00000721 0.9165582
cg00000734 0.06525593
cg00000769 0.05689384
cg00000807 0.8017002
cg00000884 0.7527664
cg00000905 0.1043912
cg00000924 0.6336417
cg00000948 0.8587684

Total number of rows: 485577

Table truncated, full table size 10028 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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