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Sample GSM1572387 Query DataSets for GSM1572387
Status Public on Jun 03, 2015
Title genomic DNA from Skin of a 112 year old female subject (Sample6)
Sample type genomic
Source name Skin
Organism Homo sapiens
Characteristics tissue: Skin
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 88.5475338628628
cor sample vs gold standard: 0.922389982578374
mean abs difference sample vs gold standard: 0.0778151038659639
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.204521
cg00000108 0.9431677
cg00000109 0.7425469
cg00000165 0.1840796
cg00000236 0.8077142
cg00000289 0.4610133
cg00000292 0.5772027
cg00000321 0.2626566
cg00000363 0.2315501
cg00000622 0.01971655
cg00000658 0.8043012
cg00000714 0.1245366
cg00000721 0.9269556
cg00000734 0.07111301
cg00000769 0.05362797
cg00000807 0.7847757
cg00000884 0.7883505
cg00000905 0.06753198
cg00000924 0.657856
cg00000948 0.8705774

Total number of rows: 485577

Table truncated, full table size 10027 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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