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Sample GSM1572383 Query DataSets for GSM1572383
Status Public on Jun 03, 2015
Title genomic DNA from Kidney of a 112 year old female subject (Sample2)
Sample type genomic
Source name Kidney
Organism Homo sapiens
Characteristics tissue: Kidney
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 85.3250179109132
cor sample vs gold standard: 0.912437647925122
mean abs difference sample vs gold standard: 0.079284799846361
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3301088
cg00000108 0.9161186
cg00000109 0.7354839
cg00000165 0.1917293
cg00000236 0.9191919
cg00000289 0.5266055
cg00000292 0.5675648
cg00000321 0.311663
cg00000363 0.2420658
cg00000622 0.009427694
cg00000658 0.7736431
cg00000714 0.1442572
cg00000721 0.9010854
cg00000734 0.05042318
cg00000769 0.03625
cg00000807 0.7263025
cg00000884 0.7232563
cg00000905 0.07135046
cg00000924 0.6345139
cg00000948 0.8841111

Total number of rows: 485577

Table truncated, full table size 10033 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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